[Stellenangebote] Postdoctoral Researcher (m/f/d) in Computational Mass Spectrometry and Machine Learning

[Benner, Philipp]

We are seeking a highly motivated postdoctoral researcher to join our team and contribute to advancing computational methods for non-targeted metabolomics. The focus of this position is to further develop Fiora, an open-source algorithm that leverages graph neural networks to simulate tandem mass spectra in silico. Fiora has already demonstrated superior performance compared to state-of-the-art tools, offering accurate predictions of fragment ion intensities, retention time, and collision cross section. By utilizing GPU optimization, Fiora enables rapid large-scale spectral simulations to expand reference libraries and improve compound identification in metabolomics studies. The successful candidate will lead efforts and push their own ideas to enhance the algorithm, validate it on benchmark datasets such as NIST, MS-Dial, and CASMI challenges, and integrate it into workflows for biomarker discovery and precision medicine. We are looking for a candidate with a PhD in computational chemistry, bioinformatics, computer science, or a related field, strong programming skills, and experience with machine learning.

https://www.bam.de/umantis/EN/2090.html



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Bundesanstalt für Materialforschung und –prüfung (BAM)

Dr. Philipp Benner
Referatsleitung VP.1 - eScience

Unter den Eichen 87
12205 Berlin
T: +49 30 8104-3647

philipp.benner at bam.de
www.bam.de<http://www.bam.de/>

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Die BAM ist eine Bundesoberbehörde im Geschäftsbereich
des Bundesministeriums für Wirtschaft und Klimaschutz.